JASPAR CORE

  1. Home
  2. Collection core

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0190.1 Gsc Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0191.1 HGTX Drosophila melanogaster Homeo domain factors NK
MA0192.1 Hmx Drosophila melanogaster Homeo domain factors NK
MA0193.1 schlank Drosophila melanogaster Homeo domain factors
MA0194.1 Lim1 Drosophila melanogaster Homeo domain factors HD-LIM
MA0195.1 Lim3 Drosophila melanogaster Homeo domain factors HD-LIM
MA0195.2 Lim3 Drosophila melanogaster Homeo domain factors HD-LIM
MA0196.1 NK7.1 Drosophila melanogaster Homeo domain factors NK
MA0197.1 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0197.2 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0197.3 nub Drosophila melanogaster Homeo domain factors POU domain factors
MA0198.1 OdsH Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0199.1 Optix Drosophila melanogaster Homeo domain factors HD-SINE
MA0200.1 Pph13 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0200.2 Pph13 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0201.1 Ptx1 Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0202.1 Rx Drosophila melanogaster Homeo domain factors Paired-related HD factors
MA0203.1 Scr Drosophila melanogaster Homeo domain factors HOX
MA0204.1 Six4 Drosophila melanogaster Homeo domain factors HD-SINE
MA0205.1 Trl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0205.2 Trl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0205.3 Trl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0206.1 abd-A Drosophila melanogaster Homeo domain factors HOX
MA0207.1 achi Drosophila melanogaster Homeo domain factors TALE-type homeo domain factors
MA0208.1 al Drosophila melanogaster Homeo domain factors Paired-related HD factors
Showing 25 profiles of page 19 from 183 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.