JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0078.3 Sox17 Mus musculus High-mobility group (HMG) domain factors SOX-related factors
MA0079.1 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.2 SP1 Homo sapiens Mus musculus Rattus norvegicus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.3 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.4 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0079.5 SP1 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0080.1 SPI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0080.2 SPI1 Homo sapiens Tryptophan cluster factors Ets-related
MA0080.3 Spi1 Mus musculus Tryptophan cluster factors Ets-related
MA0080.4 SPI1 Homo sapiens Tryptophan cluster factors Ets-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.