JASPAR CORE

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ID Name Species Class Family Sequence logo
MA0591.1 Bach1::Mafk Mus musculus Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0591.2 Bach1::Mafk Mus musculus Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0592.1 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.2 Esrra Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.3 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.4 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0593.1 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0593.2 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0594.1 Hoxa9 Mus musculus Homeo domain factors HOX
MA0594.2 HOXA9 Homo sapiens Homeo domain factors HOX
MA0594.3 HOXA9 Homo sapiens Homeo domain factors HOX
MA0595.1 SREBF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0596.1 SREBF2 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0597.1 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0597.2 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0597.3 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0598.1 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.2 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.3 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.4 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0599.1 KLF5 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0600.1 RFX2 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0600.2 RFX2 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0600.3 RFX2 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0601.1 Arid3b Mus musculus ARID ARID-related
MA0601.2 Arid3b Mus musculus ARID ARID-related
MA0602.1 Arid5a Mus musculus ARID ARID-related
MA0602.2 Arid5a Mus musculus ARID ARID-related
MA0603.1 Arntl Mus musculus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0603.2 Arntl Mus musculus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA0604.1 Atf1 Mus musculus Basic leucine zipper factors (bZIP) CREB-related factors
MA0605.1 Atf3 Mus musculus Basic leucine zipper factors (bZIP) Fos-related
MA0605.2 ATF3 Homo sapiens Basic leucine zipper factors (bZIP) Fos-related
MA0605.3 ATF3 Homo sapiens Basic leucine zipper factors (bZIP) Fos-related
MA0606.1 NFAT5 Gallus gallus Rel homology region (RHR) factors NFAT-related factors
MA0606.2 Nfat5 Mus musculus Rel homology region (RHR) factors NFAT-related factors
MA0606.3 Nfat5 Mus musculus Rel homology region (RHR) factors NFAT-related factors
MA0607.1 Bhlha15 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA0607.2 BHLHA15 Homo sapiens Basic helix-loop-helix factors (bHLH) Tal-related
MA0608.1 Creb3l2 Mus musculus Basic leucine zipper factors (bZIP) CREB-related factors
MA0609.1 Crem Mus musculus Basic leucine zipper factors (bZIP) CREB-related factors
MA0609.2 CREM Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0609.3 CREM Homo sapiens Basic leucine zipper factors (bZIP) CREB-related factors
MA0610.1 DMRT3 Homo sapiens DM-type intertwined zinc finger factors DMRT factors
MA0610.2 DMRT3 Homo sapiens DM-type intertwined zinc finger factors DMRT factors
MA0611.1 Dux Mus musculus Homeo domain factors Paired-related HD factors
MA0611.2 Dux Mus musculus Homeo domain factors Paired-related HD factors
MA0611.3 Dux Mus musculus Homeo domain factors Paired-related HD factors
MA0612.1 EMX1 Homo sapiens Homeo domain factors NK
MA0612.2 EMX1 Homo sapiens Homeo domain factors NK
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Relative profile score threshold %

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Cluster selected models using STAMP tool.



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inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.