JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1499.2 HOXB4 Homo sapiens Homeo domain factors HOX
MA1500.1 HOXB6 Homo sapiens Homeo domain factors HOX
MA1500.2 HOXB6 Homo sapiens Homeo domain factors HOX
MA1501.1 HOXB7 Homo sapiens Homeo domain factors HOX
MA1501.2 HOXB7 Homo sapiens Homeo domain factors HOX
MA1502.1 HOXB8 Homo sapiens Homeo domain factors HOX
MA1502.2 HOXB8 Homo sapiens Homeo domain factors HOX
MA1503.1 HOXB9 Homo sapiens Homeo domain factors HOX
MA1503.2 HOXB9 Homo sapiens Homeo domain factors HOX
MA1504.1 HOXC4 Homo sapiens Homeo domain factors HOX
Showing 10 profiles of page 288 from 428 pages

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Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.