JASPAR CORE

  1. Home
  2. Collection core

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1504.2 HOXC4 Homo sapiens Homeo domain factors HOX
MA1505.1 HOXC8 Homo sapiens Homeo domain factors HOX
MA1505.2 HOXC8 Homo sapiens Homeo domain factors HOX
MA1506.1 HOXD10 Homo sapiens Homeo domain factors HOX
MA1506.2 HOXD10 Homo sapiens Homeo domain factors HOX
MA1507.1 HOXD4 Homo sapiens Homeo domain factors HOX
MA1507.2 HOXD4 Homo sapiens Homeo domain factors HOX
MA1508.1 IKZF1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1508.2 IKZF1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1509.1 IRF6 Homo sapiens Tryptophan cluster factors Interferon-regulatory factors
Showing 10 profiles of page 289 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.