JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0106.3 TP53 Homo sapiens p53 domain factors p53-related factors
MA0107.1 RELA Homo sapiens Rel homology region (RHR) factors NF-kappaB-related factors
MA0108.1 TBP NA TATA-binding proteins TBP-related factors
MA0108.2 TBP NA TATA-binding proteins TBP-related factors
MA0108.3 TBP NA TATA-binding proteins TBP-related factors
MA0110.1 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.2 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.3 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0110.4 ATHB-5 Arabidopsis thaliana Homeo domain factors HD-ZIP
MA0111.1 Spz1 Mus musculus Basic helix-loop-helix factors (bHLH) bHLH-ZIP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.