JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1883.1 Hox1 Ciona intestinalis Homeo domain factors HOX
MA1883.2 Hox1 Ciona intestinalis Homeo domain factors HOX
MA1884.1 Hox3 Ciona intestinalis Homeo domain factors HOX
MA1884.2 Hox3 Ciona intestinalis Homeo domain factors HOX
MA1885.1 Hox4 Ciona intestinalis Homeo domain factors HOX
MA1885.2 Hox4 Ciona intestinalis Homeo domain factors HOX
MA1886.1 Hox5 Ciona intestinalis Homeo domain factors HOX
MA1886.2 Hox5 Ciona intestinalis Homeo domain factors HOX
MA1887.1 Hsf1-2-4 Ciona intestinalis Heat shock factors HSF factors
MA1887.2 Hsf1-2-4 Ciona intestinalis Heat shock factors HSF factors
Showing 10 profiles of page 356 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.