JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA1954.2 FOXO1::ELK1 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1955.1 FOXO1::ELK3 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1955.2 FOXO1::ELK3 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1956.1 FOXO1::FLI1 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1956.2 FOXO1::FLI1 Homo sapiens Fork head/winged helix factors::Tryptophan cluster factors FOX::Ets-related
MA1957.1 HOXB2::ELK1 Homo sapiens Homeo domain factors::Tryptophan cluster factors HOX::Ets-related
MA1958.1 HOXD12::ELK1 Homo sapiens Homeo domain factors::Tryptophan cluster factors HOX::Ets-related
MA1958.2 HOXD12::ELK1 Homo sapiens Homeo domain factors::Tryptophan cluster factors HOX::Ets-related
MA1959.1 KLF7 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1959.2 KLF7 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 10 profiles of page 370 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.