JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1959.2 KLF7 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1960.1 MGA::EVX1 Homo sapiens T-Box factors::Homeo domain factors TBX6-related factors::HOX
MA1960.2 MGA::EVX1 Homo sapiens T-Box factors::Homeo domain factors TBX6-related factors::HOX
MA1961.1 PATZ1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1961.2 PATZ1 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1962.1 POU2F1::SOX2 Homo sapiens Homeo domain factors::High-mobility group (HMG) domain factors POU domain factors::SOX-related factors
MA1963.1 SATB1 Homo sapiens Homeo domain factors HD-CUT
MA1963.2 SATB1 Homo sapiens Homeo domain factors HD-CUT
MA1964.1 SMAD2 Homo sapiens SMAD/NF-1 DNA-binding domain factors SMAD factors
MA1964.2 SMAD2 Homo sapiens SMAD/NF-1 DNA-binding domain factors SMAD factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.