JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1980.1 ZNF418 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1981.1 ZNF530 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1981.2 ZNF530 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1982.1 ZNF574 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1982.2 ZNF574 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA1983.1 ZNF582 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1983.2 ZNF582 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1984.1 ZNF667 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1984.2 ZNF667 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1985.1 ZNF669 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 374 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.