JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1996.1 Nr1H2 Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1996.2 Nr1H2 Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1997.1 Olig2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1997.2 Olig2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1998.1 Prdm14 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1998.2 Prdm14 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1999.1 Prdm5 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1999.2 Prdm5 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2001.1 Six4 Mus musculus Homeo domain factors HD-SINE
MA2001.2 Six4 Mus musculus Homeo domain factors HD-SINE
Showing 10 profiles of page 377 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.