JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2002.1 Zfp335 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2002.2 Zfp335 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2003.1 NKX2-4 Homo sapiens Homeo domain factors NK
MA2003.2 NKX2-4 Homo sapiens Homeo domain factors NK
MA2005.1 NAC016 Arabidopsis thaliana GCM domain factors NAC
MA2005.2 NAC016 Arabidopsis thaliana GCM domain factors NAC
MA2006.1 NAC020 Arabidopsis thaliana GCM domain factors NAC
MA2006.2 NAC020 Arabidopsis thaliana GCM domain factors NAC
MA2007.1 MYB107 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2007.2 MYB107 Arabidopsis thaliana Tryptophan cluster factors MYB
Showing 10 profiles of page 378 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.