JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2019.1 HSFA1B Arabidopsis thaliana Heat shock factors HSF
MA2019.2 HSFA1B Arabidopsis thaliana Heat shock factors HSF
MA2020.1 HSFB4 Arabidopsis thaliana Heat shock factors HSF
MA2020.2 HSFB4 Arabidopsis thaliana Heat shock factors HSF
MA2021.1 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2021.2 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.1 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.2 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2023.1 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA2023.2 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
Showing 10 profiles of page 381 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.