JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA2020.1 HSFB4 Arabidopsis thaliana Heat shock factors
MA2020.2 HSFB4 Arabidopsis thaliana Heat shock factors HSF
MA2021.1 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2021.2 LBD13 Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.1 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2022.2 LOB Arabidopsis thaliana Other C4 zinc finger-type factors LBD
MA2023.1 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA2023.2 PHL4 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
MA2024.1 MYB63 Arabidopsis thaliana Tryptophan cluster factors Myb
MA2024.2 MYB63 Arabidopsis thaliana Tryptophan cluster factors MYB
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.