JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2055.1 PK00315.1 Cannabis sativa Basic leucine zipper factors (bZIP) Group I
MA2056.1 PK01144.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2057.1 PK01630.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2058.1 PK03929.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2059.1 PK05432.1 Cannabis sativa GCM domain factors WRKY
MA2060.1 PK05451.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2061.1 PK06517.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2062.1 PK07031.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2063.1 PK07402.1 Cannabis sativa AP2/EREBP
MA2064.1 PK07858.1 Cannabis sativa Basic helix-loop-helix factors (bHLH) bHLH
Showing 10 profiles of page 388 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.