JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2157.1 atfs-1 Caenorhabditis elegans Basic leucine zipper factors (bZIP) ATF-4-related
MA2158.1 ceh-14 Caenorhabditis elegans Homeo domain factors HD-LIM
MA2159.1 ceh-36 Caenorhabditis elegans Homeo domain factors Paired-related HD factors
MA2160.1 ceh-39 Caenorhabditis elegans Homeo domain factors HD-CUT
MA2161.1 ceh-43 Caenorhabditis elegans Homeo domain factors NK
MA2162.1 ceh-60 Caenorhabditis elegans Homeo domain factors TALE-type homeo domain factors
MA2163.1 cnd-1 Caenorhabditis elegans Basic helix-loop-helix factors (bHLH) Tal-related
MA2164.1 egl-27 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA2165.1 elt-1 Caenorhabditis elegans Other C4 zinc finger-type factors C4-GATA-related
MA2166.1 ets-7 Caenorhabditis elegans Tryptophan cluster factors Ets-related
Showing 10 profiles of page 399 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.