JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0031.2 FOXD1 Homo sapiens Fork head/winged helix factors FOX
MA0032.1 FOXC1 Homo sapiens Fork head/winged helix factors FOX
MA0032.2 FOXC1 Homo sapiens Fork head/winged helix factors FOX
MA0033.1 FOXL1 Homo sapiens Fork head/winged helix factors FOX
MA0033.2 FOXL1 Homo sapiens Fork head/winged helix factors FOX
MA0034.1 Gam1 Hordeum vulgare Tryptophan cluster factors MYB
MA0034.2 Gam1 Hordeum vulgare Tryptophan cluster factors MYB
MA0035.1 Gata1 Mus musculus Other C4 zinc finger-type factors C4-GATA-related
MA0035.2 Gata1 Mus musculus Other C4 zinc finger-type factors C4-GATA-related
MA0035.3 Gata1 Mus musculus Other C4 zinc finger-type factors C4-GATA-related
MA0035.4 GATA1 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0035.5 GATA1 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0036.1 GATA2 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0036.2 GATA2 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0036.3 GATA2 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0036.4 GATA2 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.1 GATA3 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.2 GATA3 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.3 GATA3 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.4 Gata3 Mus musculus Other C4 zinc finger-type factors C4-GATA-related
MA0037.5 Gata3 Mus musculus Other C4 zinc finger-type factors C4-GATA-related
MA0038.1 Gfi1 Rattus norvegicus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.2 GFI1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.3 GFI1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0039.1 Klf4 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
Showing 25 profiles of page 4 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.