JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA2275.1 Sox15 Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
MA2276.1 Sox21a Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
MA2277.1 Sox21b Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
MA2278.1 SoxN Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
MA2279.1 Sp1 Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2280.1 Spps Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2281.1 SREBP Drosophila melanogaster Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2282.1 SREBP Drosophila melanogaster Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2283.1 srp Drosophila melanogaster Other C4 zinc finger-type factors C4-GATA-related
MA2284.1 ss Drosophila melanogaster Basic helix-loop-helix factors (bHLH) PAS domain factors
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.