JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2324.1 BCL11A Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2325.1 EPAS1 Homo sapiens Basic helix-loop-helix factors (bHLH) PAS domain factors
MA2326.1 IKZF2 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2327.1 PGR Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA2328.1 ZBED4 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA2329.1 ZBTB11 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2330.1 ZBTB24 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2330.2 ZBTB24 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2331.1 ZNF157 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2332.1 ZNF175 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 415 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.