JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2333.1 ZNF35 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2334.1 ZNF547 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2335.1 ZNF558 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2336.1 ZSCAN21 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2337.1 Nr1h3 Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2338.1 Ppara Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2339.1 Nanog Mus musculus Homeo domain factors NK
MA2340.1 Zbtb2 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2341.1 FEZF2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2342.1 URI Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
Showing 10 profiles of page 416 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.