JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2450.1 SPL7A Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2451.1 SPL7B Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2452.1 SPL8A Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2453.1 SPL8B Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2454.1 SPL8D1 Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2455.1 SPL9D Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2457.1 ZNF260 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2458.1 ZNF146 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2459.1 EDF3 Arabidopsis thaliana B3 RAV
MA2460.1 MGH6.1 Arabidopsis thaliana GCM domain factors NAC
Showing 10 profiles of page 427 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.