JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2491.1 ZNF134 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2492.1 ZNF18 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2493.1 ZNF322 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2494.1 ZNF436 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2495.1 ZNF490 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2496.1 ZNF596 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2497.1 ZNF623 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2498.1 LSH1 Arabidopsis thaliana HC3 zinc ribbon factors ALOG
MA2499.1 LSH2 Arabidopsis thaliana HC3 zinc ribbon factors
MA2500.1 LSH3 Arabidopsis thaliana HC3 zinc ribbon factors
Showing 10 profiles of page 431 from 458 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.