JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2571.1 ZNF800 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2572.1 ZNF827 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2573.1 ZNF836 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2574.1 ZNF878 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2575.1 ZNF536 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2576.1 ZXDB Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2577.1 ZXDC Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2578.1 ZBTB8A Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2579.1 ZBTB8B Homo sapiens C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2580.1 ZNF20 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 10 profiles of page 439 from 458 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.