JASPAR CORE

  1. Home
  2. Collection core

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2651.1 GLYMA-20G154400 Glycine max TCP
MA2652.1 GLYMA-01G053800 Glycine max GCM domain factors WRKY
MA2653.1 GLYMA-03G042700 Glycine max GCM domain factors WRKY
MA2654.1 GLYMA-05G127600 Glycine max GCM domain factors WRKY
MA2655.1 GLYMA-08G218600 Glycine max GCM domain factors WRKY
MA2656.1 GLYMA-14G006800 Glycine max GCM domain factors WRKY
MA2657.1 GLYMA-14G028900 Glycine max GCM domain factors WRKY
MA2658.1 GLYMA-19G094100 Glycine max GCM domain factors WRKY
MA2659.1 GLYMA-08G281200 Glycine max Homeo domain factors PLINC
MA2660.1 GLYMA-12G168700 Glycine max Homeo domain factors PLINC
Showing 10 profiles of page 447 from 458 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.