JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0591.1 Bach1::Mafk Mus musculus Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0591.2 Bach1::Mafk Mus musculus Basic leucine zipper factors (bZIP) Jun-related::Maf-related
MA0592.1 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.2 Esrra Mus musculus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.3 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0592.4 ESRRA Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA0593.1 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0593.2 FOXP2 Homo sapiens Fork head/winged helix factors FOX
MA0594.1 Hoxa9 Mus musculus Homeo domain factors HOX
MA0594.2 HOXA9 Homo sapiens Homeo domain factors HOX
MA0594.3 HOXA9 Homo sapiens Homeo domain factors HOX
MA0595.1 SREBF1 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0596.1 SREBF2 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA0597.1 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0597.2 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0597.3 THAP1 Homo sapiens C2CH THAP-type zinc finger factors THAP-related factors
MA0598.1 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.2 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.3 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0598.4 EHF Homo sapiens Tryptophan cluster factors Ets-related
MA0599.1 KLF5 Homo sapiens C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA0600.1 RFX2 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0600.2 RFX2 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0600.3 RFX2 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0601.1 Arid3b Mus musculus ARID ARID-related
Showing 25 profiles of page 47 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.