JASPAR CORE

  1. Home
  2. Collection core

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1862.1 FoxD-b Ciona intestinalis Fork head/winged helix factors FOX
MA1862.2 FoxD-b Ciona intestinalis Fork head/winged helix factors FOX
MA1863.1 FoxE Ciona intestinalis Fork head/winged helix factors FOX
MA1863.2 FoxE Ciona intestinalis Fork head/winged helix factors FOX
MA1864.1 FoxF Ciona intestinalis Fork head/winged helix factors FOX
MA1864.2 FoxF Ciona intestinalis Fork head/winged helix factors FOX
MA1865.1 FoxG Ciona intestinalis Fork head/winged helix factors FOX
MA1865.2 FoxG Ciona intestinalis Fork head/winged helix factors FOX
MA1866.1 FoxI-a Ciona intestinalis Fork head/winged helix factors FOX
MA1866.2 FoxI-a Ciona intestinalis Fork head/winged helix factors FOX
MA1867.1 FoxI-b Ciona intestinalis Fork head/winged helix factors FOX
MA1867.2 FoxI-b Ciona intestinalis Fork head/winged helix factors FOX
MA1868.1 FoxI-c Ciona intestinalis Fork head/winged helix factors FOX
MA1868.2 FoxI-c Ciona intestinalis Fork head/winged helix factors FOX
MA1869.1 FoxK Ciona intestinalis Fork head/winged helix factors FOX
MA1869.2 FoxK Ciona intestinalis Fork head/winged helix factors FOX
MA1870.1 FoxL2 Ciona intestinalis Fork head/winged helix factors FOX
MA1870.2 FoxL2 Ciona intestinalis Fork head/winged helix factors FOX
MA1871.1 FoxM Ciona intestinalis Fork head/winged helix factors FOX
MA1871.2 FoxM Ciona intestinalis Fork head/winged helix factors FOX
MA1872.1 FoxO Ciona intestinalis Fork head/winged helix factors FOX
MA1872.2 FoxO Ciona intestinalis Fork head/winged helix factors FOX
MA1873.1 FoxQ Ciona intestinalis Fork head/winged helix factors FOX
MA1873.2 FoxQ Ciona intestinalis Fork head/winged helix factors FOX
MA1874.1 GATA-a Ciona intestinalis Other C4 zinc finger-type factors C4-GATA-related
MA1874.2 GATA-a Ciona intestinalis Other C4 zinc finger-type factors C4-GATA-related
MA1875.1 GATA1/2/3 Ciona intestinalis Other C4 zinc finger-type factors C4-GATA-related
MA1875.2 GATA1/2/3 Ciona intestinalis Other C4 zinc finger-type factors C4-GATA-related
MA1876.1 Gsx Ciona intestinalis Homeo domain factors HOX
MA1877.1 Hes-b Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1877.2 Hes-b Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1878.1 Hes-c Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1878.2 Hes-c Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1879.1 Hex Ciona intestinalis Homeo domain factors
MA1879.2 Hex Ciona intestinalis Homeo domain factors
MA1880.1 Hey Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1880.2 Hey Ciona intestinalis Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA1881.1 Hmbox1 Ciona intestinalis Homeo domain factors POU domain factors
MA1881.2 Hmbox1 Ciona intestinalis Homeo domain factors POU domain factors
MA1882.1 Hnf1 Ciona intestinalis Homeo domain factors POU domain factors
MA1882.2 Hnf1 Ciona intestinalis Homeo domain factors POU domain factors
MA1883.1 Hox1 Ciona intestinalis Homeo domain factors HOX
MA1883.2 Hox1 Ciona intestinalis Homeo domain factors HOX
MA1884.1 Hox3 Ciona intestinalis Homeo domain factors HOX
MA1884.2 Hox3 Ciona intestinalis Homeo domain factors HOX
MA1885.1 Hox4 Ciona intestinalis Homeo domain factors HOX
MA1885.2 Hox4 Ciona intestinalis Homeo domain factors HOX
MA1886.1 Hox5 Ciona intestinalis Homeo domain factors HOX
MA1886.2 Hox5 Ciona intestinalis Homeo domain factors HOX
MA1887.1 Hsf1-2-4 Ciona intestinalis Heat shock factors HSF factors
Showing 50 profiles of page 71 from 92 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.