JASPAR CORE

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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA1991.1 Hnf1A Mus musculus Homeo domain factors POU domain factors
MA1991.2 Hnf1A Mus musculus Homeo domain factors POU domain factors
MA1992.1 Ikzf3 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1992.2 Ikzf3 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA1993.1 Neurod2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1993.2 Neurod2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1994.1 Nkx2-1 Mus musculus Homeo domain factors NK
MA1994.2 Nkx2-1 Mus musculus Homeo domain factors NK
MA1995.1 Npas4 Mus musculus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA1995.2 Npas4 Mus musculus Basic helix-loop-helix factors (bHLH) PAS domain factors
MA1996.1 Nr1H2 Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1996.2 Nr1H2 Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA1997.1 Olig2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1997.2 Olig2 Mus musculus Basic helix-loop-helix factors (bHLH) Tal-related
MA1998.1 Prdm14 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1998.2 Prdm14 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1999.1 Prdm5 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1999.2 Prdm5 Mus musculus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2001.1 Six4 Mus musculus Homeo domain factors HD-SINE
MA2001.2 Six4 Mus musculus Homeo domain factors HD-SINE
MA2002.1 Zfp335 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2002.2 Zfp335 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2003.1 NKX2-4 Homo sapiens Homeo domain factors NK
MA2003.2 NKX2-4 Homo sapiens Homeo domain factors NK
MA2005.1 NAC016 Arabidopsis thaliana GCM domain factors NAC
MA2005.2 NAC016 Arabidopsis thaliana GCM domain factors NAC
MA2006.1 NAC020 Arabidopsis thaliana GCM domain factors NAC
MA2006.2 NAC020 Arabidopsis thaliana GCM domain factors NAC
MA2007.1 MYB107 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2007.2 MYB107 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2008.1 MYB99 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2008.2 MYB99 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2009.1 NAC010 Arabidopsis thaliana GCM domain factors NAC
MA2009.2 NAC010 Arabidopsis thaliana GCM domain factors NAC
MA2010.1 SMB Arabidopsis thaliana GCM domain factors NAC
MA2010.2 SMB Arabidopsis thaliana GCM domain factors NAC
MA2011.1 ERF010 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2011.2 ERF010 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2013.1 ERF115 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2013.2 ERF115 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2014.1 BAM8 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA2014.2 BAM8 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA2015.1 NAC002 Arabidopsis thaliana GCM domain factors NAC
MA2015.2 NAC002 Arabidopsis thaliana GCM domain factors NAC
MA2016.1 GRF6 Arabidopsis thaliana C3H zinc finger factors GRF
MA2016.2 GRF6 Arabidopsis thaliana C3H zinc finger factors GRF
MA2017.1 JUB1 Arabidopsis thaliana GCM domain factors NAC
MA2017.2 JUB1 Arabidopsis thaliana GCM domain factors NAC
MA2018.1 NAC69 Arabidopsis thaliana GCM domain factors NAC
MA2018.2 NAC69 Arabidopsis thaliana GCM domain factors NAC
Showing 50 profiles of page 76 from 92 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


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Download the PFMs of the model(s) selected in four different formats.