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Total 4572 profiles

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ID Name Species Class Family Sequence logo
MA0975.1 CRF2 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.1 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.2 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0976.3 CRF4 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0977.1 DOF2.5 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0978.1 DREB1E Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.1 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.2 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0980.3 RAP2-10 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0981.1 DOF1.8 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0981.2 DOF1.8 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0982.1 DOF2.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0982.2 DOF2.4 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0983.1 DOF5.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0983.2 DOF5.6 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0984.1 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0984.2 DOF5.7 Arabidopsis thaliana Other C4 zinc finger-type factors DOF
MA0986.1 DREB2C Arabidopsis thaliana AP2/EREBP ERF/DREB
MA0987.1 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0987.2 PHYPADRAFT_140773 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0988.1 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA0988.2 PHYPADRAFT_143875 Physcomitrium patens Basic helix-loop-helix factors (bHLH) bHLH
MA0989.1 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0989.2 PHYPADRAFT_153324 Physcomitrium patens Other C4 zinc finger-type factors DOF
MA0990.1 HDG11 Arabidopsis thaliana Homeo domain factors HD-ZIP
Showing 25 profiles of page 78 from 183 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.