JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0029.1 Mecom Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0029.2 Mecom Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA0030.1 FOXF2 Homo sapiens Fork head/winged helix factors FOX
MA0030.2 FOXF2 Homo sapiens Fork head/winged helix factors FOX
MA0031.1 FOXD1 Homo sapiens Fork head/winged helix factors FOX
MA0031.2 FOXD1 Homo sapiens Fork head/winged helix factors FOX
MA0032.1 FOXC1 Homo sapiens Fork head/winged helix factors FOX
MA0032.2 FOXC1 Homo sapiens Fork head/winged helix factors FOX
MA0033.1 FOXL1 Homo sapiens Fork head/winged helix factors FOX
MA0033.2 FOXL1 Homo sapiens Fork head/winged helix factors FOX
Showing 10 profiles of page 8 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.