JASPAR CORE

  1. Home
  2. Collection core

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2285.1 sug Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2286.1 svp Drosophila melanogaster Nuclear receptors with C4 zinc fingers RXR-related receptors (NR2)
MA2287.1 TfAP-2 Drosophila melanogaster Basic helix-span-helix factors (bHSH) AP-2
MA2288.1 tj Drosophila melanogaster Basic leucine zipper factors (bZIP) Maf-related
MA2289.1 toy Drosophila melanogaster Paired box factors Paired plus homeo domain
MA2290.1 Usf Drosophila melanogaster Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2291.1 vri Drosophila melanogaster Basic leucine zipper factors (bZIP) CEBP-related
MA2292.1 wor Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2293.1 Xbp1 Drosophila melanogaster Basic leucine zipper factors (bZIP) XBP-1-related factors
MA2294.1 Xrp1 Drosophila melanogaster
MA2295.1 ac Drosophila melanogaster Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA2296.1 aop Drosophila melanogaster Tryptophan cluster factors Ets-related
MA2297.1 BtbVII Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2298.1 CG3065 Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2299.1 CG4854 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2300.1 CG8319 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2301.1 clk Drosophila melanogaster Basic helix-loop-helix factors (bHLH) PAS domain factors
MA2302.1 Crg-1 Drosophila melanogaster Fork head/winged helix factors FOX
MA2303.1 crp Drosophila melanogaster Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2304.1 cwo Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2305.1 cyc Drosophila melanogaster Basic helix-loop-helix factors (bHLH) PAS domain factors
MA2306.1 D1 Drosophila melanogaster TATA-binding proteins HMGA
MA2307.1 D19B Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2308.1 da Drosophila melanogaster Basic helix-loop-helix factors (bHLH) E2A
MA2309.1 ewg Drosophila melanogaster Basic leucine zipper factors (bZIP) Jun-related
MA2310.1 fru Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2311.1 ftz-f1 Drosophila melanogaster Nuclear receptors with C4 zinc fingers FTZF1-related (NR5A)
MA2312.1 grn Drosophila melanogaster Other C4 zinc finger-type factors C4-GATA-related
MA2313.1 hng1 Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2314.1 hr3 Drosophila melanogaster Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2315.1 insv Drosophila melanogaster
MA2316.1 l(3)neo38 Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2316.2 l(3)neo38 Drosophila melanogaster C2H2 zinc finger factors Three-zinc finger Kruppel-related
MA2317.1 nau Drosophila melanogaster Basic helix-loop-helix factors (bHLH) MyoD/ASC-related factors
MA2318.1 pita Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2319.1 run Drosophila melanogaster Runt domain factors Runt-related factors
MA2320.1 Sox100B Drosophila melanogaster High-mobility group (HMG) domain factors SOX-related factors
MA2321.1 tx Drosophila melanogaster Basic helix-loop-helix factors (bHLH) Tal-related
MA2322.1 ZIPIC Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2323.1 Pgr Rattus norvegicus Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA2324.1 BCL11A Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2325.1 EPAS1 Homo sapiens Basic helix-loop-helix factors (bHLH) PAS domain factors
MA2326.1 IKZF2 Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2327.1 PGR Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA2328.1 ZBED4 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA2329.1 ZBTB11 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2330.1 ZBTB24 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2330.2 ZBTB24 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2331.1 ZNF157 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2332.1 ZNF175 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
Showing 50 profiles of page 83 from 92 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.