JASPAR CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2327.1 PGR Homo sapiens Nuclear receptors with C4 zinc fingers Steroid hormone receptors (NR3)
MA2328.1 ZBED4 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA2329.1 ZBTB11 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2330.1 ZBTB24 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2331.1 ZNF157 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2332.1 ZNF175 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2333.1 ZNF35 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2334.1 ZNF547 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2335.1 ZNF558 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2336.1 ZSCAN21 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2337.1 Nr1h3 Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2338.1 Ppara Mus musculus Nuclear receptors with C4 zinc fingers Thyroid hormone receptor-related factors (NR1)
MA2339.1 Nanog Mus musculus Homeo domain factors NK
MA2340.1 Zbtb2 Mus musculus C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2341.1 FEZF2 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2342.1 URI Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) bHLH
MA2343.1 MYB3R3 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2344.1 REV Arabidopsis thaliana Homeo domain factors HD-ZIP
MA2345.1 OS02G0104500 Oryza sativa Tryptophan cluster factors Trihelix
MA2346.1 OsTCP7 Oryza sativa TCP
MA2347.1 OS04G0486400 Oryza sativa Tryptophan cluster factors Trihelix
MA2348.1 IDD6 Arabidopsis thaliana C2H2 zinc finger factors IDD
MA2349.1 OsCCA1 Oryza sativa Tryptophan cluster factors MYB-related
MA2350.1 OsFBH1 Oryza sativa Basic helix-loop-helix factors (bHLH) bHLH
MA2351.1 OsEIL3 Oryza sativa Other all-alpha-helical DNA-binding domains EIL
MA2352.1 PC-MYB1 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2353.1 PK02532.1 Cannabis sativa Tryptophan cluster factors MYB-related
MA2354.1 PK06182.1 Cannabis sativa Tryptophan cluster factors MYB
MA2355.1 PK06791.1 Cannabis sativa C3H(C),C2HC zinc-fingers like factors SBP
MA2356.1 PK20555.1 Cannabis sativa Other C4 zinc finger-type factors DOF
MA2357.1 PK21687.1 Cannabis sativa Tryptophan cluster factors MYB-related
MA2358.1 PK22320.1 Cannabis sativa C3H(C),C2HC zinc-fingers like factors SBP
MA2359.1 PK23829.1 Cannabis sativa Tryptophan cluster factors MYB-related
MA2360.1 PK28565.1 Cannabis sativa Tryptophan cluster factors MYB
MA2361.1 PRUPE_ppa000682mg NA C3H(C),C2HC zinc-fingers like factors SBP
MA2362.1 TEIL NA EIL
MA2363.1 TOE2 Arabidopsis thaliana AP2/EREBP AP2
MA2364.1 VIT_15s0048g01150 NA TCP
MA2365.1 VIT_17s0000g10420 NA Tryptophan cluster factors Trihelix
MA2366.1 VOZ2 Arabidopsis thaliana GCM domain factors VOZ
MA2367.1 WIP5 Arabidopsis thaliana C2H2 zinc finger factors C2H2
MA2368.1 WRKY51 Arabidopsis thaliana GCM domain factors WRKY
MA2369.1 ZHD14 Arabidopsis thaliana Homeo domain factors PLINC
MA2370.1 MBD2 Arabidopsis thaliana C2H2 zinc finger factors
MA2371.1 MYB31 Arabidopsis thaliana Tryptophan cluster factors MYB
MA2372.1 AZF1 Arabidopsis thaliana C2H2 zinc finger factors
MA2373.1 AZF2 Arabidopsis thaliana C2H2 zinc finger factors
MA2374.1 AHL13 Arabidopsis thaliana A.T hook factors AHL
MA2375.1 BMY2 Arabidopsis thaliana Basic helix-loop-helix factors (bHLH) BES/BZR
MA2376.1 CAMTA5 Arabidopsis thaliana GCM domain factors CAMTA
Showing 50 profiles of page 84 from 86 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Create random matrix models based on selected models.


Create models with permuted columns from selected models.


Download the PFMs of the model(s) selected in four different formats.