JASPAR CORE

Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2591.1 ZNF850 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2592.1 MKX Homo sapiens Homeo domain factors TALE-type HD
MA2593.1 ZNF362 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2594.1 DMTF1 Homo sapiens Tryptophan cluster factors Myb-SANT
MA2595.1 ZNF700 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2596.1 ZXDA Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2597.1 LEUTX Homo sapiens Homeo domain factors Paired-related HD
MA2598.1 MSANTD1 Homo sapiens Tryptophan cluster factors Myb-SANT
MA2599.1 TIGD3 Homo sapiens
MA2600.1 TPRX1 Homo sapiens Homeo domain factors Paired-related HD
MA2601.1 USF3 Homo sapiens Basic helix-loop-helix factors (bHLH) bHLH-ZIP
MA2602.1 ZBED5 Homo sapiens C2H2 zinc finger factors BED zinc finger factors
MA2603.1 ZFTA Homo sapiens C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2604.1 dof22 Zea mays Other C4 zinc finger-type factors DOF
MA2605.1 mybr26 Zea mays Tryptophan cluster factors MYB-related
MA2606.1 mybr43 Zea mays Tryptophan cluster factors MYB-related
MA2607.1 tcptf23 Zea mays TCP
MA2608.1 glk53 Zea mays Tryptophan cluster factors GARP_G2-like
MA2609.1 ereb172 Zea mays AP2/EREBP ERF/DREB
MA2610.1 ereb97 Zea mays AP2/EREBP ERF/DREB
MA2611.1 ereb209 Zea mays AP2/EREBP ERF/DREB
MA2612.1 ereb147 Zea mays AP2/EREBP ERF/DREB
MA2613.1 ereb34 Zea mays AP2/EREBP ERF/DREB
MA2614.1 ereb198 Zea mays AP2/EREBP ERF/DREB
MA2615.1 ereb109 Zea mays AP2/EREBP ERF/DREB
MA2616.1 ereb17 Zea mays AP2/EREBP ERF/DREB
MA2617.1 ereb54 Zea mays AP2/EREBP ERF/DREB
MA2618.1 ereb102 Zea mays AP2/EREBP ERF/DREB
MA2619.1 ereb18 Zea mays AP2/EREBP ERF/DREB
MA2620.1 g2 Zea mays Tryptophan cluster factors GARP_G2-like
MA2621.1 glk25 Zea mays Tryptophan cluster factors GARP_G2-like
MA2622.1 hb34 Zea mays Homeo domain factors HD-ZIP
MA2623.1 hb66 Zea mays Homeo domain factors HD-ZIP
MA2624.1 myb37 Zea mays Tryptophan cluster factors MYB
MA2625.1 mybr17 Zea mays Tryptophan cluster factors MYB-related
MA2626.1 bzip40 Zea mays Basic leucine zipper factors (bZIP) Group S
MA2627.1 bzip9 Zea mays Basic leucine zipper factors (bZIP) Group S
MA2628.1 HELT Homo sapiens Basic helix-loop-helix factors (bHLH) Hairy-related factors
MA2629.1 GSC::TBX21 Homo sapiens Homeo domain factors::T-Box factors Paired-related HD factors::TBX1-related factors
MA2630.1 Sry-beta Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2631.1 bab1 Drosophila melanogaster C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
MA2632.1 crol Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA2633.1 Sry-delta Drosophila melanogaster C2H2 zinc finger factors Factors with multiple dispersed zinc fingers
MA2634.1 EIN3 Arabidopsis thaliana EIL EIL
MA2635.1 FUL Arabidopsis thaliana MADS box factors Type II
MA2636.1 FUL::AG Arabidopsis thaliana MADS box factors Type II
MA2637.1 FUL::AG::SEP3 Arabidopsis thaliana MADS box factors Type II
MA2638.1 FUL::SEP3 Arabidopsis thaliana MADS box factors Type II
MA2639.1 FUL::SOC1 Arabidopsis thaliana MADS box factors Type II
MA2640.1 GLYMA-19G062000 Glycine max Tryptophan cluster factors MYB
Showing 50 profiles of page 89 from 92 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.


You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)

Relative profile score threshold %

Cluster selected models using STAMP tool.




You can use the Newick tree from results to visualize on PhyloTree

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download the PFMs of the model(s) selected in four different formats.