JASPAR CORE

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Total 4572 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2741.1 SlWRKY7 Solanum lycopersicum GCM domain factors WRKY
MA2742.1 SlWRKY11 Solanum lycopersicum GCM domain factors WRKY
MA2743.1 SlWRKY23 Solanum lycopersicum GCM domain factors WRKY
MA2744.1 SlWRKY40 Solanum lycopersicum GCM domain factors WRKY
MA2745.1 SlWRKY81 Solanum lycopersicum GCM domain factors WRKY
MA2746.1 HB-HD-ZIP-2A-2 Triticum aestivum Homeo domain factors HD-ZIP
MA2747.1 TraesCS6A02G290800 Triticum aestivum Homeo domain factors HD-ZIP
MA2748.1 TraesCS6B02G321100 Triticum aestivum Homeo domain factors HD-ZIP
MA2749.1 TraesCS2D02G576500 Triticum aestivum GCM domain factors NAC
MA2750.1 TraesCS7B02G142200 Triticum aestivum C3H(C),C2HC zinc-fingers like factors SBP
MA2751.1 TraesCS2B02G304400 Triticum aestivum Tryptophan cluster factors Trihelix
MA2752.1 TaOBF1b Triticum aestivum Basic leucine zipper factors (bZIP) Group S
MA2753.1 cpp8 Zea mays CPP
MA2754.1 wrky38 Zea mays GCM domain factors WRKY
MA2755.1 hsftf24 Zea mays Heat shock factors HSF
MA2756.1 dfo23 Zea mays Other C4 zinc finger-type factors DOF
MA2757.1 pbf1 Zea mays Other C4 zinc finger-type factors DOF
MA2758.1 ereb122 Zea mays AP2/EREBP ERF/DREB
MA2759.1 ereb7 Zea mays AP2/EREBP ERF/DREB
MA2760.1 p2 Zea mays Tryptophan cluster factors MYB
MA2761.1 myb100 Zea mays Tryptophan cluster factors MYB
MA2762.1 myb53 Zea mays Tryptophan cluster factors MYB
Showing 22 profiles of page 92 from 92 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.