JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0485.1 Hoxc9 Mus musculus Homeo domain factors HOX
MA0485.2 HOXC9 Homo sapiens Homeo domain factors HOX
MA0485.3 HOXC9 Homo sapiens Homeo domain factors HOX
MA0486.1 HSF1 Homo sapiens Heat shock factors HSF factors
MA0486.2 HSF1 Homo sapiens Heat shock factors HSF factors
MA0488.1 JUN Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA0488.2 JUN Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA0489.1 JUN Homo sapiens Basic leucine zipper factors (bZIP) Jun-related
MA0489.2 Jun Mus musculus Basic leucine zipper factors (bZIP) Jun-related
MA0489.3 Jun Mus musculus Basic leucine zipper factors (bZIP) Jun-related
Showing 10 profiles of page 94 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.