JASPAR Collection UNVALIDATED

  1. Home
  2. Collection unvalidated

Total 1363 profiles

These profiles are regarded as unvalidated because our curators failed to find any orthogonal support from existing literature. We encourage the community to perform experiments and/or point us to literature that our curators missed in order to support these profiles.
Display profiles
ID Name Species Class Family Sequence logo
UN0005.1 PK03025.1 Cannabis sativa AP2/EREBP ERF/DREB
UN0008.1 PK04914.1 Cannabis sativa Tryptophan cluster factors Trihelix
UN0008.2 PK04914.1 Cannabis sativa Tryptophan cluster factors Trihelix
UN0013.1 PK05732.1 Cannabis sativa Tryptophan cluster factors GARP_G2-like
UN0013.2 PK05732.1 Cannabis sativa Tryptophan cluster factors GARP_G2-like
UN0030.1 PK12240.1 Cannabis sativa TCP
UN0034.1 PK14653.1 Cannabis sativa TCP
UN0034.2 PK14653.1 Cannabis sativa TCP
UN0044.1 PK19166.1 Cannabis sativa Homeo domain factors
UN0047.1 PK19621.1 Cannabis sativa Tryptophan cluster factors MYB
UN0047.2 PK19621.1 Cannabis sativa Tryptophan cluster factors MYB
UN0067.1 PK25034.1 Cannabis sativa Homeo domain factors TALE-type HD
UN0067.2 PK25034.1 Cannabis sativa Homeo domain factors TALE-type HD
UN0072.1 PK27085.1 Cannabis sativa GCM domain factors NAC
UN0076.1 PK27683.1 Cannabis sativa CPP
UN0076.2 PK27683.1 Cannabis sativa CPP
UN0078.1 PK28187.1 Cannabis sativa Tryptophan cluster factors MYB
UN0080.1 PHL3 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
UN0080.2 PHL3 Arabidopsis thaliana Tryptophan cluster factors GARP_G2-like
UN0081.1 rsv2 Schizosaccharomyces pombe C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
UN0081.2 rsv2 Schizosaccharomyces pombe C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
UN0082.1 HCAG_04779 Histoplasma capsulatum C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
UN0082.2 HCAG_04779 Histoplasma capsulatum C2H2 zinc finger factors Other factors with up to three adjacent zinc fingers
UN0083.1 ada-1 Neurospora crassa Basic leucine zipper factors (bZIP)
UN0083.2 ada-1 Neurospora crassa Basic leucine zipper factors (bZIP)
Showing 25 profiles of page 1 from 55 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

inMOTIFin

Input a (FASTA-formatted) sequence or simulate one to insert the selected matrix models.




Probability of the letters in the background alphabet (ACGT). Note: probabilities should sum to 1.


Download

Download the PFMs of the model(s) selected in four different formats.