Detailed information of matrix profile MA0017.2

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Profile summary
Name: NR2F1
Matrix ID: MA0017.2
Class: Nuclear receptors with C4 zinc fingers
Family: RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 8496174
Uniprot ID: P10589  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 3466 2427 1469 2270 0 0 12059 0 0 0 469 1948 3980 ]
C [ 36863 3886 4395 1618 91 0 0 12059 12059 3791 4869 1153 3276 ]
G [ 2912 2470 2966 3055 0 12059 0 0 30 0 387 1692 11446 ]
T [ 5681 3276 3229 5116 12059 0 0 0 0 8496 6333 7266 4802 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0017.1 MA0017 1 NR2F1 Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0017.2 MA0017 2 NR2F1 Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
MA0017.3 MA0017 3 NR2F1 Homo sapiens
RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0194.1

ChIP-seq Centrality
-log(P-value): 6627.73

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0194.1

ChIP-seq Centrality
-log(P-value): 6578.91

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: