Detailed information of matrix profile MA0143.1

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Profile summary
Name: Sox2
Matrix ID: MA0143.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 18555785
Uniprot ID: P48432  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 27 20 327 2 14 38 85 64 408 26 27 32 426 366 485 ]
C [ 444 453 7 10 1 83 4 194 124 39 77 422 41 67 60 ]
G [ 89 22 4 7 6 529 9 77 38 26 444 84 36 157 61 ]
T [ 107 174 331 650 648 19 570 333 96 575 117 127 161 74 58 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0143.1 MA0143 1 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.2 MA0143 2 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.3 MA0143 3 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.4 MA0143 4 SOX2 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
MA0143.5 MA0143 5 SOX2 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: