Detailed information of matrix profile MA0143.3

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Profile summary
Name: Sox2
Matrix ID: MA0143.3
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Mus musculus
Data Type: ChIP-seq
Validation: 15863505
Uniprot ID: P48432  
Source: PAZAR
Comment:

Sequence logo

Frequency matrix

         
A [ 0 0 669 0 0 0 0 0 ]
C [ 1476 1476 0 0 0 0 0 419 ]
G [ 0 0 0 0 0 1476 0 297 ]
T [ 0 0 807 1476 1476 0 1476 760 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0143.1 MA0143 1 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.2 MA0143 2 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.3 MA0143 3 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.4 MA0143 4 SOX2 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
MA0143.5 MA0143 5 SOX2 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     

-log(P-value) = 971.0

TFFM details

TFFM ID: TFFM0095.1

ChIP-seq Centrality
-log(P-value): 1571.68

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0095.1

ChIP-seq Centrality
-log(P-value): 1535.24

TFFM detailed summary logos

Description: SRY (sex determining region Y)-box 2

Alias: -

Symbol: SOX2

Consensus:

Included Models:

GC Content: