Detailed information of matrix profile MA0143.4

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Profile summary
Name: SOX2
Matrix ID: MA0143.4
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 15863505
Uniprot ID: P48431  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 23321 21971 10304 1656 79277 1185 2412 4848 1385 23164 24174 ]
C [ 15998 17765 54414 73372 930 2002 550 1243 418 17157 21434 ]
G [ 17475 17158 6264 800 732 1742 1205 78356 436 15154 11041 ]
T [ 28960 28860 14772 9926 4815 80825 81587 1307 83515 30279 29105 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0143.1 MA0143 1 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.2 MA0143 2 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.3 MA0143 3 Sox2 Mus musculus
SOX-related factors High-mobility group (HMG) domain factors
MA0143.4 MA0143 4 SOX2 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
MA0143.5 MA0143 5 SOX2 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     

-log(P-value) = 4918.23

TFFM details

TFFM ID: TFFM0095.2

ChIP-seq Centrality
-log(P-value): 9412.72

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0095.2

ChIP-seq Centrality
-log(P-value): 9056.28

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: