Detailed information of matrix profile MA0162.3

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Profile summary
Name: EGR1
Matrix ID: MA0162.3
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 16041365
Uniprot ID: P18146  
Source: 23332764
Comment:

Sequence logo

Frequency matrix

         
A [ 778 596 30 13 2 1 0 34 13 0 0 6 18 648 ]
C [ 181 104 160 0 2156 0 7 0 0 0 2087 3 3 193 ]
G [ 211 458 20 1654 0 1650 307 1642 1645 1630 0 1616 394 391 ]
T [ 510 482 1308 0 0 0 1221 0 0 0 39 11 1166 461 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0162.1 MA0162 1 Egr1 Mus musculus
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.2 MA0162 2 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.3 MA0162 3 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.4 MA0162 4 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.5 MA0162 5 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0020.2

ChIP-seq Centrality
-log(P-value): 23701.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0020.2

ChIP-seq Centrality
-log(P-value): 21904.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: