Detailed information of matrix profile MA0555.1

  1. Home
  2. Matrix > MA0555.1

Profile summary
Name: SVP
Matrix ID: MA0555.1
Class: MADS box factors
Family: Type II
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 8774892
Uniprot ID: Q9FVC1  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 30 21 11 6 4 11 0 2 34 3 12 6 12 11 9 0 32 53 45 19 ]
C [ 3 5 39 2 2 0 92 74 14 3 2 0 8 7 1 0 11 10 8 21 ]
G [ 21 16 8 7 2 10 0 0 10 8 1 0 5 16 79 85 16 1 11 24 ]
T [ 38 50 34 77 84 71 0 16 34 78 77 86 67 58 3 7 33 28 28 28 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0555.1 MA0555 1 SVP Arabidopsis thaliana
Type II MADS box factors
MA0555.2 MA0555 2 SVP Arabidopsis thaliana
Type II MADS box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0393.1

ChIP-seq Centrality
-log(P-value): 8859.18

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0393.1

ChIP-seq Centrality
-log(P-value): 8836.29

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: