Detailed information of matrix profile MA0563.1

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Profile summary
Name: SEP3
Matrix ID: MA0563.1
Class: MADS box factors
Family: Type II
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 19033361
Uniprot ID: O22456  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 24 19 1 77 12 19 0 9 11 9 0 ]
C [ 37 111 97 0 28 0 0 0 3 0 7 ]
G [ 29 5 1 0 5 5 0 24 22 138 114 ]
T [ 60 15 51 73 105 126 150 117 114 3 29 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0563.1 MA0563 1 SEP3 Arabidopsis thaliana
Type II MADS box factors
MA0563.2 MA0563 2 SEP3 Arabidopsis thaliana
Type II MADS box factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0582.1

ChIP-seq Centrality
-log(P-value): 419.438

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0582.1

ChIP-seq Centrality
-log(P-value): 429.561

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: