Detailed information of matrix profile MA0866.1

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Profile summary
Name: SOX21
Matrix ID: MA0866.1
Class: High-mobility group (HMG) domain factors
Family: SOX-related factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 12920151
Uniprot ID: Q9Y651  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 15806 15806 8 15806 5073 1 8384 4725 5819 15806 0 1 24 232 106 ]
C [ 484 37 15806 77 10733 40 73 7901 9624 30 56 22 28 2008 199 ]
G [ 790 17 4 15 9 20 7221 1271 15 3 13 7 15806 250 83 ]
T [ 279 33 10 84 64 15806 128 1909 348 6 15806 15806 15 15806 15806 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0866.1 MA0866 1 SOX21 Homo sapiens
SOX-related factors High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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