Detailed information of matrix profile MA1386.1

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Profile summary
Name: HHO3
Matrix ID: MA1386.1
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q9FPE8  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 262 0 584 598 0 230 6 80 92 165 219 ]
C [ 41 0 0 0 0 369 0 37 314 103 47 ]
G [ 280 599 1 0 0 0 9 47 94 145 154 ]
T [ 16 0 14 1 599 0 584 435 99 186 179 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1386.1 MA1386 1 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1386.2 MA1386 2 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1386.3 MA1386 3 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0232.1

ChIP-seq Centrality
-log(P-value): 10037.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0232.1

ChIP-seq Centrality
-log(P-value): 10086.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: