Detailed information of matrix profile MA1386.2

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Profile summary
Name: HHO3
Matrix ID: MA1386.2
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 25215497
Uniprot ID: Q9FPE8  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 652 666 777 1482 2197 2 2206 79 68 5 247 680 684 ]
C [ 436 534 381 236 12 4 11 2 18 2237 386 378 415 ]
G [ 311 321 490 174 8 2170 9 1 32 4 167 474 339 ]
T [ 849 727 600 356 31 72 22 2166 2130 2 1448 716 810 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1386.1 MA1386 1 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1386.2 MA1386 2 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1386.3 MA1386 3 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     

-log(P-value) = 1161.4

TFFM details

TFFM ID: TFFM0848.1

ChIP-seq Centrality
-log(P-value): 1236.05

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0848.1

ChIP-seq Centrality
-log(P-value): 1278.01

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: