Detailed information of matrix profile MA1386.2

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Profile summary
Name: HHO3
Matrix ID: MA1386.2
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 25215497
Uniprot ID: Q9FPE8  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 810 716 1448 2 2130 2166 22 72 31 356 600 727 849 ]
C [ 339 474 167 4 32 1 9 2170 8 174 490 321 311 ]
G [ 415 378 386 2237 18 2 11 4 12 236 381 534 436 ]
T [ 684 680 247 5 68 79 2206 2 2197 1482 777 666 652 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1386.1 MA1386 1 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1386.2 MA1386 2 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1386.3 MA1386 3 HHO3 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     

-log(P-value) = 1161.4

TFFM details

TFFM ID: TFFM0848.1

ChIP-seq Centrality
-log(P-value): 1236.05

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0848.1

ChIP-seq Centrality
-log(P-value): 1278.01

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: