JASPAR CORE

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Total 4279 profiles

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ID Name Species Class Family Sequence logo
MA0036.4 GATA2 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.1 GATA3 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.2 GATA3 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.3 GATA3 Homo sapiens Other C4 zinc finger-type factors C4-GATA-related
MA0037.4 Gata3 Mus musculus Other C4 zinc finger-type factors C4-GATA-related
MA0037.5 Gata3 Mus musculus Other C4 zinc finger-type factors C4-GATA-related
MA0038.1 Gfi1 Rattus norvegicus C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.2 GFI1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0038.3 GFI1 Homo sapiens C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA0039.1 Klf4 Mus musculus C2H2 zinc finger factors Three-zinc finger Kruppel-related
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.