JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0042.2 FOXI1 Homo sapiens Fork head/winged helix factors FOX
MA0043.1 HLF Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0043.2 HLF Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0043.3 HLF Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0043.4 HLF Homo sapiens Basic leucine zipper factors (bZIP) CEBP-related
MA0046.1 HNF1A Vertebrata Homeo domain factors POU domain factors
MA0046.2 HNF1A Homo sapiens Homeo domain factors POU domain factors
MA0046.3 HNF1A Homo sapiens Homeo domain factors POU domain factors
MA0047.1 Foxa2 Rattus norvegicus Fork head/winged helix factors FOX
MA0047.2 Foxa2 Mus musculus Fork head/winged helix factors FOX
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.