JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0798.2 RFX3 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0798.3 RFX3 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0799.1 RFX4 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0799.2 RFX4 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0799.3 RFX4 Homo sapiens Fork head/winged helix factors RFX-related factors
MA0800.1 EOMES Homo sapiens T-Box factors TBrain-related factors
MA0800.2 EOMES Homo sapiens T-Box factors TBrain-related factors
MA0801.1 MGA Homo sapiens T-Box factors TBX6-related factors
MA0802.1 TBR1 Homo sapiens T-Box factors TBrain-related factors
MA0802.2 TBR1 Homo sapiens T-Box factors TBrain-related factors
Showing 10 profiles of page 159 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.