Detailed information of matrix profile MA0796.1

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Profile summary
Name: TGIF1
Matrix ID: MA0796.1
Class: Homeo domain factors
Family: TALE-type homeo domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 8537382
Uniprot ID: Q15583  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 39 9 8828 1 8861 14 452 1 11 45 36 9034 ]
C [ 19 8 3 13304 5 20 10562 62 13 24 13485 17 ]
G [ 1 13499 20 5 22 12673 2520 8 13261 3 13 32 ]
T [ 13221 4 0 7 4 963 12 12775 9 12656 17 33 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0796.1 MA0796 1 TGIF1 Homo sapiens
TALE-type homeo domain factors Homeo domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0606.1

ChIP-seq Centrality
-log(P-value): 9720.82

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0606.1

ChIP-seq Centrality
-log(P-value): 9777.49

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: