JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1458.1 Hsf Drosophila melanogaster Heat shock factors HSF factors
MA1458.2 Hsf Drosophila melanogaster Heat shock factors HSF factors
MA1459.1 M1BP Drosophila melanogaster C2H2 zinc finger factors
MA1459.2 M1BP Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1460.1 pho Drosophila melanogaster C2H2 zinc finger factors
MA1460.2 pho Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
MA1461.1 sv Drosophila melanogaster Paired box factors
MA1461.2 sv Drosophila melanogaster Paired box factors Paired domain only
MA1462.1 vfl Drosophila melanogaster C2H2 zinc finger factors
MA1462.2 vfl Drosophila melanogaster C2H2 zinc finger factors More than 3 adjacent zinc fingers
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.